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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43111572_43129555_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
43111572 - 43129555
Intron Length:
17984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TTAACTCAAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.6
31.9
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
85.2
0.79
0.7
81
31
Minor 5ss
36
-1.6
3.2
49.9
46.5
Minor BPS
49.6
0.05
2
74.32
42.2

Associated Gene:

Gene:
TSHR
Ensembl Gene ID:
ENSAPLG00000001646
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044190
43111500 - 43173082
61583