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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43129628_43144090_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43129628 - 43144090
Intron Length:
14463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
CTTTCTTTACAG
Flanking Amino Acid:
AFSNLPNISRIEIRNLRNLD
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
28.7
Major BPS
79
0.72
1
80.3
31.7
Major PPT
88.5
0.87
0.7
83.1
25.4
Minor 5ss
45.3
-0.5
2.8
64.3
39.9
Minor BPS
56.7
0.07
1.8
63.96
44.2

Associated Gene:

Gene:
TSHR
Ensembl Gene ID:
ENSAPLG00000001646
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037186
43109291 - 43173082
63792
ENSAPLT00000036424
43109291 - 43173082
63792
ENSAPLT00000030677
43109291 - 43173082
63792