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Intron Name: Anas_platyrhynchos_platyrhynchos_5_43136079_43144090_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43136079 - 43144090

Intron Length:

8012

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTAAGTACT

5'SS Class:

strong_major

3'SS Sequence:

CCTTTCTTTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATCAA

U12 Branch Point Sequence:

CTTTCTTTACAG

Flanking Amino Acid:

SFNSLSKVTHIEIRNLRNLD

Intron Amino Acid Position:

108

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

86.5

28.5

Major BPS

0.72

80.3

31.7

Major PPT

88.5

0.87

0.7

83.1

25.4

Minor 5ss

40.8

-1

2.8

57.5

39.6

Minor BPS

56.7

0.07

1.8

63.96

44.2

Associated Gene:

Gene:

TSHR

Ensembl Gene ID:

ENSAPLG00000001646

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044190

43111500 - 43173082

61583

ENSAPLT00000002009

43109291 - 43173133

63843