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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43145470_43150951_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43145470 - 43150951
Intron Length:
5482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TCTCCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
AGATGTTTGACT
Flanking Amino Acid:
KIYSSDVNFLLEIADNPFMT
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
78.6
35.6
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
87.6
0.85
0.7
80
31.9
Minor 5ss
43.2
-0.7
2.9
64.8
39.3
Minor BPS
55.3
0.25
1.8
70.62
40.4

Associated Gene:

Gene:
TSHR
Ensembl Gene ID:
ENSAPLG00000001646
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030677
43109291 - 43173082
63792
ENSAPLT00000002009
43109291 - 43173133
63843
ENSAPLT00000044190
43111500 - 43173082
61583
ENSAPLT00000036424
43109291 - 43173082
63792