About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43151030_43152009_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43151030 - 43152009
Intron Length:
980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
AATACACTAATT
Flanking Amino Acid:
FHGLCNESLTLKLYNNGFTS
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
68.7
42
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
93.6
0.98
0.6
89.1
19.8
Minor 5ss
39.8
-1.1
3.1
61.7
42.2
Minor BPS
49.5
0.04
1.9
71.02
39.2

Associated Gene:

Gene:
TSHR
Ensembl Gene ID:
ENSAPLG00000001646
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036424
43109291 - 43173082
63792
ENSAPLT00000030677
43109291 - 43173082
63792
ENSAPLT00000002009
43109291 - 43173133
63843
ENSAPLT00000044190
43111500 - 43173082
61583