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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43152079_43160071_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43152079 - 43160071
Intron Length:
7993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TATTTCCAAATA
Flanking Amino Acid:
HAFNGTNLDAIYLHKNKYLK
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
84.8
0.78
0.8
77
37.3
Minor 5ss
38.5
-1.3
2.8
50.4
39.2
Minor BPS
51.5
0.04
1.9
68.65
37.9

Associated Gene:

Gene:
TSHR
Ensembl Gene ID:
ENSAPLG00000001646
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036424
43109291 - 43173082
63792
ENSAPLT00000030677
43109291 - 43173082
63792
ENSAPLT00000002009
43109291 - 43173133
63843
ENSAPLT00000044190
43111500 - 43173082
61583
ENSAPLT00000037186
43109291 - 43173082
63792