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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43160150_43170001_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43160150 - 43170001
Intron Length:
9852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTAGG
5'SS Class:
major
3'SS Sequence:
TTCCTTTACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCTTCCTTTACC
Flanking Amino Acid:
FLGVHSGPTLLDISRTEIVN
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
62.1
43.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
74.7
0.56
0.8
69.4
35.9
Minor 5ss
32.6
-2
2.8
43.3
43.7
Minor BPS
77.1
0.83
1.5
82.88
37.2

Associated Gene:

Gene:
TSHR
Ensembl Gene ID:
ENSAPLG00000001646
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036424
43109291 - 43173082
63792
ENSAPLT00000002009
43109291 - 43173133
63843
ENSAPLT00000044190
43111500 - 43173082
61583
ENSAPLT00000037186
43109291 - 43173082
63792