Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43170191_43171671_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43170191 - 43171671

Intron Length:

1481

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TGTACTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTAAAT

U12 Branch Point Sequence:

TTCCCCTGTACT

Flanking Amino Acid:

CAFKHMKKSSGILEYLMCNQ

Intron Amino Acid Position:

296

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.9

83.9

30.3

Major BPS

67.2

0.43

1.2

73.3

39.1

Major PPT

81.1

0.7

0.9

77.5

36.7

Minor 5ss

40.2

-1.1

49.9

46.4

Minor BPS

58.7

0.36

1.9

78.86

42.8

Associated Gene:

Gene:

TSHR

Ensembl Gene ID:

ENSAPLG00000001646

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036424

43109291 - 43173082

63792

ENSAPLT00000002009

43109291 - 43173133

63843

ENSAPLT00000044190

43111500 - 43173082

61583

ENSAPLT00000037186

43109291 - 43173082

63792