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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43187243_43191288_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43187243 - 43191288
Intron Length:
4046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTATTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTCCCTATTT
Flanking Amino Acid:
ENVVVCQYDKIHRSKNKWKF
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
74
36.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78.7
0.65
0.8
77
30.5
Minor 5ss
33
-1.9
3.3
47.4
48
Minor BPS
65.9
0.58
1.9
88.76
36.3

Associated Gene:

Gene:
GTF2A1
Ensembl Gene ID:
ENSAPLG00000002573
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002634
43186992 - 43210684
23693