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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43191379_43194698_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43191379 - 43194698
Intron Length:
3320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATTA
5'SS Class:
strong_major
3'SS Sequence:
ACATTTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTAGTGTAACT
Flanking Amino Acid:
DGGEDGQVEEEPLNSEDDVS
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.2
28.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.8
0.65
0.9
69.9
40.7
Minor 5ss
40.9
-1
3.2
56
48.2
Minor BPS
47.7
-0.1
2.4
73.03
44

Associated Gene:

Gene:
GTF2A1
Ensembl Gene ID:
ENSAPLG00000002573
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002634
43186992 - 43210684
23693