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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43197108_43199157_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43197108 - 43199157
Intron Length:
2050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATAAC
U12 Branch Point Sequence:
TTTTCCTGTATT
Flanking Amino Acid:
LIPHMNTSGMSAAATAATLA
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.7
29.9
Major BPS
57.8
0.19
1.1
59.6
32.6
Major PPT
80
0.68
0.9
77
35.9
Minor 5ss
32.9
-1.9
2.9
37.3
41.2
Minor BPS
68.6
0.67
1.8
89.01
35.5

Associated Gene:

Gene:
GTF2A1
Ensembl Gene ID:
ENSAPLG00000002573
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002634
43186992 - 43210684
23693