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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43233882_43235037_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43233882 - 43235037
Intron Length:
1156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTCCTCTGACA
Flanking Amino Acid:
VNYSAHYSYKVEIEQKKSLN
Intron Amino Acid Position:
861

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.9
36.1
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
79.6
0.67
0.9
76.3
32.4
Minor 5ss
40.9
-1
3.2
55.7
48.5
Minor BPS
62.2
0.38
1.6
76.92
33.2

Associated Gene:

Gene:
STON2
Ensembl Gene ID:
ENSAPLG00000003219
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003282
43232430 - 43288692
56263