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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43235241_43240132_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43235241 - 43240132
Intron Length:
4892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CCAACACAAATT
Flanking Amino Acid:
RINRLPDKNSASGHPHCFFC
Intron Amino Acid Position:
793

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
81.3
32.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
90.8
0.92
0.6
83.9
31.1
Minor 5ss
29
-2.4
3.2
40.6
45.6
Minor BPS
39.2
-0.7
2
51.16
43.1

Associated Gene:

Gene:
STON2
Ensembl Gene ID:
ENSAPLG00000003219
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003282
43232430 - 43288692
56263