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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43287993_43288484_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43287993 - 43288484
Intron Length:
492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCTAT
U12 Branch Point Sequence:
CTCTCTCTATTT
Flanking Amino Acid:
DELLLPVKPRGSTEAPLEKC
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.1
30.7
Major BPS
61.2
0.28
1.4
60.7
45.4
Major PPT
79.1
0.66
0.8
77.6
29.6
Minor 5ss
37
-1.5
3.3
49.2
47.3
Minor BPS
48.6
-0
1.9
67.66
44.1

Associated Gene:

Gene:
STON2
Ensembl Gene ID:
ENSAPLG00000003219
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003282
43232430 - 43288692
56263