About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43320384_43321449_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43320384 - 43321449
Intron Length:
1066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTGTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGCTAT
U12 Branch Point Sequence:
CTTTGCCTAGCT
Flanking Amino Acid:
LLHWNRAASQGYTVARIKLG
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
50.9
0.02
1.4
50.5
44.9
Major PPT
77.6
0.62
0.9
72.2
38
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
49
0
2.3
76.52
45.8

Associated Gene:

Gene:
SEL1L
Ensembl Gene ID:
ENSAPLG00000003250
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003367
43317454 - 43337201
19748
ENSAPLT00000041626
43317454 - 43337201
19748