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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43322359_43322983_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43322359 - 43322983
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AGTTCCTGACAA
Flanking Amino Acid:
VMRSCHTAVELFKNVCERGR
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85.6
0.8
0.7
81.3
23.7
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
51.1
0.03
1.8
65.25
40.4

Associated Gene:

Gene:
SEL1L
Ensembl Gene ID:
ENSAPLG00000003250
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041626
43317454 - 43337201
19748
ENSAPLT00000003367
43317454 - 43337201
19748