About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43325195_43325872_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43325195 - 43325872
Intron Length:
678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATCAATA
Flanking Amino Acid:
NSHAMAFLGKMYSEGSDVVP
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
90.6
0.91
0.6
89
20.1
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
60.7
0.33
1.8
74.09
37.2

Associated Gene:

Gene:
SEL1L
Ensembl Gene ID:
ENSAPLG00000003250
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041626
43317454 - 43337201
19748
ENSAPLT00000003367
43317454 - 43337201
19748