Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43333515_43336846_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43333515 - 43336846

Intron Length:

3332

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTGCT

5'SS Class:

strong_major

3'SS Sequence:

TATCTATTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATCTAT

U12 Branch Point Sequence:

GCAGTCTTACTC

Flanking Amino Acid:

ELEEAEIQSPVLTAIGGTAD

Intron Amino Acid Position:

119

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

1.1

78.8

35.5

Major BPS

0.4

1.3

64.8

42.4

Major PPT

84.4

0.77

0.8

81.6

34.6

Minor 5ss

40.9

-1

3.2

59.5

Minor BPS

47.4

-0.2

1.7

50.67

40.8

Associated Gene:

Gene:

SEL1L

Ensembl Gene ID:

ENSAPLG00000003250

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003367

43317454 - 43337201

19748

ENSAPLT00000041626

43317454 - 43337201

19748