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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43446627_43502690_F

Intron Information:

Intron Rank:
136438
Intron Class:
major
Intron Phase:
Intron Coordinates:
43446627 - 43502690
Intron Length:
56064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTTTTTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
88.4
0.86
0.7
85.7
28.6
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
69.7
0.7
1.5
85.39
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023511
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018362
43374203 - 43528059
153857