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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4358284_4358547_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4358284 - 4358547
Intron Length:
264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GGTTTATGAATT
Flanking Amino Acid:
VRKHLERNRKDKDAKFRLIL
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.9
0.85
0.7
81.4
35.9
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
53.3
0.18
1.7
71.62
38.9

Associated Gene:

Gene:
RPS13
Ensembl Gene ID:
ENSAPLG00000011983
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012496
4357391 - 4360812
3422