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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43590758_43595023_R

Intron Information:

Intron Rank:
152571
Intron Class:
major
Intron Phase:
Intron Coordinates:
43590758 - 43595023
Intron Length:
4266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCCCACTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTACTGGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.6
0.67
0.8
76.2
32
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
48.3
-0
2.1
71.79
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029666
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047443
43590680 - 43603841
13162