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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43591099_43595023_R

Intron Information:

Intron Rank:
152565
Intron Class:
major
Intron Phase:
Intron Coordinates:
43591099 - 43595023
Intron Length:
3925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTGTTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
100
1.24
0.5
100
0
Major PPT
81.7
0.71
0.8
76.4
31.9
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
53.7
0.2
1.7
70.08
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029666
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018614
43590961 - 43603841
12881