Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43598793_43611186_R

Intron Information:

Intron Rank:

152570

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

43598793 - 43611186

Intron Length:

12394

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTGAGTACT

5'SS Class:

strong_major

3'SS Sequence:

TTGCATGAAGTAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTTGCAT

U12 Branch Point Sequence:

CTTGCATGAAGT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

82.6

29.4

Major BPS

62.7

0.32

1.4

39.9

Major PPT

0.14

1.1

52.2

41.5

Minor 5ss

35.4

-1.7

2.9

48.5

40.3

Minor BPS

47.5

-0.1

2.1

69.74

46.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029666

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036997

43598525 - 43611369

12845