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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43608965_43611236_F

Intron Information:

Intron Rank:
130914
Intron Class:
major
Intron Phase:
Intron Coordinates:
43608965 - 43611236
Intron Length:
2272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCACAT
U12 Branch Point Sequence:
AGCTCAGCACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.6
30.6
Major BPS
53.7
0.09
1.1
60.7
37.6
Major PPT
92.5
0.96
0.6
88.1
21.6
Minor 5ss
34.7
-1.7
2.6
44.5
42.8
Minor BPS
34.3
-1.1
2.3
49.88
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020306
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030003
43532680 - 43612486
79807