About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43611328_43611883_F

Intron Information:

Intron Rank:
130905
Intron Class:
major
Intron Phase:
Intron Coordinates:
43611328 - 43611883
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGGTTC
5'SS Class:
major
3'SS Sequence:
ACTTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGTCATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.3
73.9
38
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
80.1
0.68
0.9
76.9
36.6
Minor 5ss
36.7
-1.5
3.3
50.2
46.4
Minor BPS
79.9
1.02
1.5
93.44
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020306
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030003
43532680 - 43612486
79807
ENSAPLT00000027595
43575536 - 43612135
36600
ENSAPLT00000026814
43563121 - 43612486
49366