Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43612031_43612113_F

Intron Information:

Intron Rank:

130906

Intron Class:

major

Intron Phase:

Intron Coordinates:

43612031 - 43612113

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTTTGTACA

5'SS Class:

major

3'SS Sequence:

TCTCCCTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAT

U12 Branch Point Sequence:

ATTACTTTGAGA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.8

0.44

1.2

67.2

37.5

Major BPS

0.75

78.6

Major PPT

82.5

0.73

0.7

80.8

24.3

Minor 5ss

38.6

-1.3

2.3

41.7

38.6

Minor BPS

58.1

0.25

1.7

69.08

37.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020306

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027595

43575536 - 43612135

36600

ENSAPLT00000026814

43563121 - 43612486

49366