Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43618154_43621978_F

Intron Information:

Intron Rank:

131708

Intron Class:

major

Intron Phase:

Intron Coordinates:

43618154 - 43621978

Intron Length:

3825

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAGGAG

5'SS Class:

major

3'SS Sequence:

CTGTCTTTTAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TATTGCATAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.4

0.46

1.1

57.4

41.7

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

73.4

0.53

74.1

34.5

Minor 5ss

26.8

-2.7

3.7

36.9

47.7

Minor BPS

57.1

0.2

72.57

38.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020702

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039850

43618001 - 43622686

4686