About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43634154_43643114_F

Intron Information:

Intron Rank:
140626
Intron Class:
major
Intron Phase:
Intron Coordinates:
43634154 - 43643114
Intron Length:
8961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGGAAT
5'SS Class:
major
3'SS Sequence:
TTACATTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGTCTTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.3
78.6
37.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
71.8
0.49
1.1
65.6
44.9
Minor 5ss
29.3
-2.4
3.1
39.7
45.9
Minor BPS
51.3
0.12
1.7
70.85
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025720
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022504
43631763 - 43655685
23923