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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4363640_4363877_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4363640 - 4363877
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
AGTTTTCTAACT
Flanking Amino Acid:
FIMVMHIKDLVTEDGADPNP
Intron Amino Acid Position:
1599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
76.4
0.59
0.9
70.7
39.8
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
62.9
0.48
1.6
79.48
36.2

Associated Gene:

Gene:
PIK3C2A
Ensembl Gene ID:
ENSAPLG00000010801
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011327
4362586 - 4396342
33757