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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4363988_4364385_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4363988 - 4364385
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTACT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
ATAATTATATTT
Flanking Amino Acid:
EGIDGIARSTDASPSSPTSG
Intron Amino Acid Position:
1562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.4
33.5
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
93.6
0.98
0.6
92.5
25.6
Minor 5ss
37
-1.5
3.1
51.8
44.8
Minor BPS
44.5
-0.3
1.7
60.3
37.5

Associated Gene:

Gene:
PIK3C2A
Ensembl Gene ID:
ENSAPLG00000010801
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039952
4362586 - 4396342
33757
ENSAPLT00000011327
4362586 - 4396342
33757