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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43643197_43652290_F

Intron Information:

Intron Rank:
140627
Intron Class:
major
Intron Phase:
Intron Coordinates:
43643197 - 43652290
Intron Length:
9094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTATCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTCACTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
79
0.65
0.8
73.1
30.6
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
62.5
0.47
1.7
79.84
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025720
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022504
43631763 - 43655685
23923