Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4364468_4364563_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4364468 - 4364563

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTGAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

CTTCCAAATCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

TACCATTTAATC

Flanking Amino Acid:

LMNSSSEVSECDLVYTFFHP

Intron Amino Acid Position:

1535

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

0.9

76.5

27.6

Major BPS

90.7

1.01

0.7

19.9

Major PPT

65.1

0.34

0.9

56.4

Minor 5ss

36.7

-1.5

2.8

41.8

38.8

Minor BPS

56.1

0.17

1.5

61.8

37.6

Associated Gene:

Gene:

PIK3C2A

Ensembl Gene ID:

ENSAPLG00000010801

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011327

4362586 - 4396342

33757

ENSAPLT00000039952

4362586 - 4396342

33757