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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43650767_43652290_F

Intron Information:

Intron Rank:
140630
Intron Class:
major
Intron Phase:
Intron Coordinates:
43650767 - 43652290
Intron Length:
1524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGGAAG
5'SS Class:
major
3'SS Sequence:
CTCCTATCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTCACTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
67.4
39.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
79
0.65
0.8
73.1
30.6
Minor 5ss
26.3
-2.7
2.9
27.4
37.8
Minor BPS
62.5
0.47
1.7
79.84
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025720
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042927
43648089 - 43662240
14152