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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43652402_43656957_F

Intron Information:

Intron Rank:
140623
Intron Class:
major
Intron Phase:
Intron Coordinates:
43652402 - 43656957
Intron Length:
4556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ATATTCTCAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
74
36.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
93.5
0.98
0.6
92.3
18.1
Minor 5ss
36.7
-1.5
2.6
45.3
42.8
Minor BPS
63.8
0.43
1.5
70.69
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025720
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018864
43651803 - 43657791
5989