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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43661886_43663513_F

Intron Information:

Intron Rank:
140633
Intron Class:
major
Intron Phase:
Intron Coordinates:
43661886 - 43663513
Intron Length:
1628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCATTGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TCTTTGCTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
65.6
0.35
1
62.2
38.8
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
42.6
-0.5
2.5
67.26
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025720
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047421
43661717 - 43663593
1877