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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43661886_43663876_F

Intron Information:

Intron Rank:
140628
Intron Class:
major
Intron Phase:
Intron Coordinates:
43661886 - 43663876
Intron Length:
1991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTGTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TATTGCTTCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
76.5
0.6
0.9
68.5
42.1
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
59.6
0.29
2.2
75.39
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025720
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026424
43661425 - 43664003
2579