About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4369305_4369412_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4369305 - 4369412
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTGTTCTCAAGT
Flanking Amino Acid:
YNPTEEEYEKASENFIYSCA
Intron Amino Acid Position:
1239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
80
0.67
0.7
72.2
32.4
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
60.7
0.41
1.9
79.52
42.8

Associated Gene:

Gene:
PIK3C2A
Ensembl Gene ID:
ENSAPLG00000010801
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039952
4362586 - 4396342
33757
ENSAPLT00000011327
4362586 - 4396342
33757