Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4375212_4375843_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4375212 - 4375843

Intron Length:

632

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTATGTTCA

5'SS Class:

major

3'SS Sequence:

CTTTTGTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATGAC

U12 Branch Point Sequence:

ATGACCTAAAAT

Flanking Amino Acid:

LAILAKDNTIGLSKEDKEFL

Intron Amino Acid Position:

897

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

70.3

36.5

Major BPS

74.7

0.62

1.1

65.7

Major PPT

85.9

0.81

0.8

80.7

31.4

Minor 5ss

46.1

-0.4

2.4

50.4

Minor BPS

55.3

0.24

1.8

72.57

43.8

Associated Gene:

Gene:

PIK3C2A

Ensembl Gene ID:

ENSAPLG00000010801

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039952

4362586 - 4396342

33757

ENSAPLT00000011327

4362586 - 4396342

33757