Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43758570_43758902_F

Intron Information:

Intron Rank:

142451

Intron Class:

major

Intron Phase:

Intron Coordinates:

43758570 - 43758902

Intron Length:

333

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACATTTT

5'SS Class:

strong_major

3'SS Sequence:

CCTTCATCTATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

CTCTCTTCATCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.71

81.4

33.4

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

75.4

0.57

0.8

69.3

30.2

Minor 5ss

44.4

-0.6

3.2

44.3

Minor BPS

49.9

-0

1.8

61.83

44.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026747

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038571

43758311 - 43760675

2365