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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43758953_43760446_F

Intron Information:

Intron Rank:
142452
Intron Class:
major
Intron Phase:
Intron Coordinates:
43758953 - 43760446
Intron Length:
1494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
ACTGGTCTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
66.4
0.37
1
63.2
42.4
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
50.3
0.09
1.9
74.24
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026747
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038571
43758311 - 43760675
2365