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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4375987_4376738_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4375987 - 4376738
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTATATAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTCTTAAGAACT
Flanking Amino Acid:
KGNMERIVLQVDFPSHAFDI
Intron Amino Acid Position:
850

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.2
71.7
34
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
36
-1.6
3
48.4
47.1
Minor BPS
48.9
0
2
74.83
41.5

Associated Gene:

Gene:
PIK3C2A
Ensembl Gene ID:
ENSAPLG00000010801
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039952
4362586 - 4396342
33757
ENSAPLT00000011327
4362586 - 4396342
33757