Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43784995_43789828_F

Intron Information:

Intron Rank:

129693

Intron Class:

major

Intron Phase:

Intron Coordinates:

43784995 - 43789828

Intron Length:

4834

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAACTTCT

5'SS Class:

strong_major

3'SS Sequence:

TTATTTACTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

ACTTATTTACTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

1.1

81.4

33.4

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

80.3

0.68

0.8

79.3

33.8

Minor 5ss

48.4

-0.1

2.5

68.6

42.1

Minor BPS

53.3

0.18

1.8

70.58

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019795

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044280

43783671 - 43790003

6333