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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43784995_43861739_F

Intron Information:

Intron Rank:
129691
Intron Class:
major
Intron Phase:
Intron Coordinates:
43784995 - 43861739
Intron Length:
76745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTATCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TAATATTAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1.1
81.4
33.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
82.7
0.74
0.7
81.1
30.7
Minor 5ss
48.4
-0.1
2.5
68.6
42.1
Minor BPS
54
0.12
1.8
66.4
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019795
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025232
43784845 - 43861837
76993