Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4379218_4380871_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4379218 - 4380871

Intron Length:

1654

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGTGAT

5'SS Class:

major

3'SS Sequence:

TTTTATTTTATAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

CTTACTTTAATA

Flanking Amino Acid:

NFFYLIKWDELIIFPIQISQ

Intron Amino Acid Position:

757

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

1.1

74.7

35.4

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

88.5

0.87

0.7

84.4

30.2

Minor 5ss

37.3

-1.4

3.4

45.5

Minor BPS

72.3

0.7

1.2

75.57

36.3

Associated Gene:

Gene:

PIK3C2A

Ensembl Gene ID:

ENSAPLG00000010801

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039952

4362586 - 4396342

33757

ENSAPLT00000011327

4362586 - 4396342

33757