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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4380995_4381085_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4380995 - 4381085
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTGTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTGTTTACTT
Flanking Amino Acid:
AHGIFPGWVANYEKYYLICS
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.1
0.79
0.8
84.4
30.5
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
60.1
0.39
2
82.98
39.3

Associated Gene:

Gene:
PIK3C2A
Ensembl Gene ID:
ENSAPLG00000010801
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039952
4362586 - 4396342
33757
ENSAPLT00000011327
4362586 - 4396342
33757