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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4381300_4381386_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4381300 - 4381386
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTATAAATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TAACTTATAAAT
Flanking Amino Acid:
CGDDPSKSSSGSLQPESPLK
Intron Amino Acid Position:
645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
78.6
0.71
1
78.6
31
Major PPT
58.8
0.2
1
57.7
41.5
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
48.5
-0
1.6
65.76
38

Associated Gene:

Gene:
PIK3C2A
Ensembl Gene ID:
ENSAPLG00000010801
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039952
4362586 - 4396342
33757
ENSAPLT00000011327
4362586 - 4396342
33757