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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4387397_4388653_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4387397 - 4388653
Intron Length:
1257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTGAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
CTATATTTAACT
Flanking Amino Acid:
FQQPVTFTCDVSSPVELIIM
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
75.1
35.8
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
79
0.65
1
76.9
36
Minor 5ss
43.8
-0.7
3
58
42
Minor BPS
70
0.71
1.5
81.67
39.8

Associated Gene:

Gene:
PIK3C2A
Ensembl Gene ID:
ENSAPLG00000010801
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011327
4362586 - 4396342
33757
ENSAPLT00000039952
4362586 - 4396342
33757