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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4390204_4395167_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4390204 - 4395167
Intron Length:
4964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGACTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTCTTTGACT
Flanking Amino Acid:
LAKLQGQTSQKDNGTTGLLT
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
80.7
0.69
0.9
73.8
35.8
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
88.5
1.29
0.8
99.14
22.1

Associated Gene:

Gene:
PIK3C2A
Ensembl Gene ID:
ENSAPLG00000010801
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011327
4362586 - 4396342
33757
ENSAPLT00000039952
4362586 - 4396342
33757