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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_43981676_43987303_R

Intron Information:

Intron Rank:
134495
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
43981676 - 43987303
Intron Length:
5628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
CTGGAACGTCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTTCTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.6
37
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
58.4
0.19
1.1
47.3
44.8
Minor 5ss
38
-1.4
2.7
44.7
42.7
Minor BPS
78.4
0.97
1.2
92.49
29.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019661
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036512
43981458 - 44004845
23388