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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_44055488_44103135_F

Intron Information:

Intron Rank:
140720
Intron Class:
major
Intron Phase:
Intron Coordinates:
44055488 - 44103135
Intron Length:
47648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGA
5'SS Class:
major
3'SS Sequence:
ATTCATCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76
0.58
0.9
69.1
36.1
Minor 5ss
36.2
-1.6
3.2
47.7
47.7
Minor BPS
55.7
0.16
2
71.1
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025757
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026546
44054845 - 44103663
48819